Welcome to snakemake_rnaseq’s documentation!

Be sure to che check out the Crunchomics documentation

Contents:

• Welcome to snakemake_rnaseq’s documentation!
• RNA-seq analysis pipeline
• Description
  • Description
  • Input files
  • Output files
  • Prerequisites: what you should know before using this pipeline
  • Content of this GitHub repository
• Installation and usage (local machine)
  • Installation
  • Usage
  • Configuration :pencil2:
  • Dry run
  • Real run
• Installation and usage (HPC cluster)
  • Installation
  • Usage
• Directed Acyclic Graph of jobs
• References :green_book:
  • Authors
  • Pipeline dependencies
  • Acknowledgments :clap:
• Getting Started
  • Installation
• Slurm and snakemake for Dummies

Indices and tables

• Index

• Module Index

• Search Page